2024 Chipbase 2.0

Chipbase 2.0

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August undefined, 2024

WebNov 4, 2013 · ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res. 2013; 41:D177–D187. [Europe PMC free article] [Google Scholar] 16. Liu X, Wang S, Meng F, Wang J, Zhang Y, Dai E, Yu X, Li X, Jiang W. SM2miR: a database of the experimentally … WebNov 2, 2015 · XP. 1,516. Country. Nov 2, 2015. #1. Here's a re-upload of my Chipsune! 2.0 Which is what I think is the latest version (I stopped keeping track, and my files are a …

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http://www.rnanut.net/lncrnadisease/index.php/home WebThe current release of ChIPBase includes high-throughput sequencing data that were generated by 543 ChIP-Seq experiments in diverse tissues and cell lines from six organisms. By analysing millions of TFBSs, we identified tens of thousands of TF-lncRNA and TF-miRNA regulatory relationships. corring basell stories knapp

The library statistics of ChIP-seq datasets in ChIPBase v2.0

WebSep 7, 2024 · ChIPBase constructed ‘Regulator’ module to predict hundreds of TFs and histone modifications that were involved in or affected transcription of ncRNAs and PCGs. ChIPBase built a web-based tool, Co-Expression, to recognize the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene … http://starbase.sysu.edu.cn/starbase2/index.php WebAn ensemble model of binary node interactions (valid for an abstract average cell) was derived from publicly available data. Transcription factor binding data was derived from ChIPBase 2.0 (Zhou et al., 2024), and … corringham community centre

ChIPBase v2.0: decoding transcriptional regulatory

LncRNADisease2 - 生信果仁小站

WebNov 18, 2024 · ChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which … WebFor comments, suggestions on the ChIPBase database, please use the E-mail: [email protected] Please cite ChIPBase paper, Nucleic Acids Res. 2013; 41:D177 … bravos daily watchlistWebstarBase v2.0: decoding Interaction Networks of lncRNAs, miRNAs, ceRNAs ... corringham barbers

"WebThis page allows you to search LncRNA-Disease or CircRNA-Disease Associations of interest by the keywords. For Keyword Search, you may use different types of keyword as input for database searching, the LncRNA Symbol for instance, you can use Official gene symbol (e.g. ' H19 ') etc. For Advanced Filter, you can use different combinations of the ... " - Chipbase 2.0

Chipbase 2.0

System overview of ChIPBase v2.0 core framework. All

WebFeb 13, 2024 · Transcription factor binding data w as derived from ChIPBase 2.0 41, and information on other. known interactions w ere sourced from KEGG 42 and Reactome.org (see T able S1). Statistical analysis. WebHere, we have updated the LncRNADisease database to version 2.0 by integrating comprehensive experimentally supported and predicted ncRNA-disease associations curated from manual literatures and other resources. The new developments in LncRNADisease v2.0 include (I) over 40-fold ncRNA-disease associations enhancement …

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WebThe current release of ChIPBase includes high-throughput sequencing data that were generated by 543 ChIP-Seq experiments in diverse tissues and cell lines from six … http://deepbase.sysu.edu.cn/chipbase/expression.php

WebThe protein module on the Chipbase v.2.0 website displayed binding sites in both the upstream and downstream regions of IRF4 and Notch2 (Figure 4B). The co-expression … WebFor comments, suggestions on the ChIPBase database, please use the E-mail: [email protected] Please cite ChIPBase paper, Nucleic Acids Res. 2013; 41:D177-87. . The Number of Visitors: 119761

WebNucleicAcidsResearch,2024,Vol.45,Databaseissue D75 man lncRNAs. Until now, no specialized resource has beendevotedtocollecting,storinganddistributingdisease- WebFeb 3, 2016 · ExtRaINSIGHT: Track the History of Harmful Mutations in the Human Genome The UEA sRNA Workbench 4.7.1 Alpha Available

WebJan 4, 2024 · System overview of ChIPBase v2.0 core framework. All results generated by ChIPBase v2.0 are deposited in MySQL relational databases and displayed in the visual browser and web page.

WebJan 8, 2024 · In addition, a series of databases have been developed to explore ncRNA expression patterns, regulatory networks and biological functions, such as RNAcentral , LNCipedia , LncRNAdb , ChIPBase , NONCODE , LncRNADisease , starBase and circBase . However, these databases focus on either specific ncRNA families or specific features … corringham beachWebName Description type Link References ChIPBase ChIPBase a database for Transcription factor-binding sites, motifs (~1290 transcription factors) and decoding the transcriptional … corrin fire emblem warriors charactershttp://plantpan.itps.ncku.edu.tw/ corringham barclays bankWebJul 17, 2024 · The CHIPS Alliance announced it released the Advanced Interface Bus (AIB) version 2.0 draft specification on GitHub. AIB standard is an open-source, royalty-free … corrin first nameWebDownload Table The library statistics of ChIP-seq datasets in ChIPBase v2.0 from publication: ChIPBase v2.0: Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding ... corringham animal aidWebOct 26, 2024 · Approximately 10% of c-Myc-regulated genes (download from ChIPBase v.2.0) were inhibited by rapamycin. View Large Image Figure Viewer; Download Hi-res image Download (PPT) To investigate the relationship between STAT3 and c-Myc, we used data from a STAT3 chromatin ... corringham countyWebMar 17, 2024 · A rapamycin analog containing an alkyne group (alk-rapa) was synthesized by a one-step reaction between rapamycin and 3-(but-3-yn-1-yl)-3-(2-iodoethyl)-3H-diazirine at room temperature overnight (Figures 1 A and S1 A).The azide-rhodamine or azide-biotin was reacted with alk-rapa by a copper-catalyzed azide-alkyne cycloaddition (CuAAC) … corringham conservation area